Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori UM066

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
24493ACATTTAAATGCATTAAAATATATTGAAATDesign primers
35683ATTAAAACGCTGTTAAGACGCTTTTGAAACGCTDesign primers
47978GCAAGTTATGGCGGTGCAAGTTATGGTAGCGCGAGTTATGGTGCTDesign primers
104878ATGGGTTTTGGT-TTGGGTTTTGGT-TTGGGTTTTTGTDesign primers
118528GTAGAC-TTAGAC-TTAGAC-TTAGAC-TTAGACDesign primers
123924AGCTTGTTGTTGAGCTTGTTGCTCTGCTTGTTGTTCGGCGTGTTGTTGDesign primers
141703AA-AA-AG-AA-AA-AT-AA-GA-AA-AA-AA-AG-AG-ADesign primers
145275TTGATTGAATGATTAAATGAATGAATGATTAAATGADesign primers
145312TGAATGCT-TGAATGCT-TGAATGAT-TGAATGAT-TGAATGCT-TGAATGCT-TGAATGCT-TGAATGAT-TGAATGCT-TGAATGCT-TGAATGAT-TGAATGCCDesign primers
145557TTTAATTTAAGGCTTTATTGATTTAAGGTTTTATTGATTTAAGGCTTTDesign primers
149890CTTTTATT-CTTTTATT-CTTTTATT-CTTTTATT-CTTTTATT-CTTTTATT-CTTTTATT-CTTTTATTDesign primers
179386TTGTCTTTTTCTTTGACTATGTCTDesign primers
179475TTCTTCTTTAGGCTCTTCTTTTTTAACCTCTTCAACTTTAGGTTCDesign primers
179575GGTTTAGGTTTTGGCTTGGGTTTTGGCTTGGGTTTTDesign primers
196207AATATTAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAA-ATACATAADesign primers
244147TGTTTGGCTAATTCTTTGGCTAATTGTTCGGCTAGTDesign primers
245596TCATTCATTCAATCAGCTTGCATTCAATCAGCATGCATTCAATAADesign primers
255977ATGCCCTTAT-TTAATCTTAT-TTAATCTTAT-TTAATCTTAT-TTAATCTTAT-TTAATCTTATDesign primers
265844TATGGCTTATATGGTTTATATGGGTTADesign primers
288382ATTCCAAATAAATGCCGAATAAATGCCAAATAADesign primers
324672ATTTAATCTTCATTTAATATCCGTTTAATCTTTDesign primers
371886GTTTTAATTGGATTTATTTGGTTTTAATGTDesign primers
386533GAAAAAAAAGAAGAAAAAGTAGAAGAAAAAAAAGATDesign primers
386698CAAAAAGATGAGCAAAAAAATGAGCAAGAAGAAGAGDesign primers
435267TAAAACCCCCAATAACCCCCTAATAACCCCDesign primers
442138TCTATTGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTTDesign primers
494539GTTGCTTGAATGCTTGAATGCTTGAATGCTTGAATGATTGAATGCTTGAATGCTTGAATGATTGDesign primers
494758TTTAATTTAAGGCTTTATTGATTTAAGGTTTTATTGATTTAAGGCTTTDesign primers
569698GAAAGAAAGACAGAAAGAAAAAAADesign primers
584028GTGGTTTTTGATCAG-AGAGTTTTTGATCAG-AGAGTTTTTGATCAG-AGAGTTTTTGATCAGDesign primers
584089GAGCTTTTGATCAGA-GAGCTTTTGATCAGA-GAGCTTTTGATCAAGDesign primers
586533AGCGTTTGCGTTGGCGCTTGCGTTGGCGTTTGCGTTDesign primers
595497GCTTTTCTTTTTTAAAACTCTTTCTTTTTTAAAACCCTTTCTTTTTTAAAACTTTTTCTTTTTTAAACDesign primers
655276GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
655828GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
710850AGGTTTGGGTTTTGGTTTAGGCTTDesign primers
759262CTCGTGGCAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGATDesign primers
762222ATTTGCGCGATT-TTTTGCGCGATT-TTTTGCGCGCTTDesign primers
778484CCATAAGGCATGAAACCATAGGGCATGTAATAATAAGGCATGTAADesign primers
821553ATATCTCTATTATTG-AGATATTTATTATTG-AGATATTTATTATTG-AGATATTTATTATTGDesign primers
824207ATGCCCTCTTATACCCTCTTATACCCTATTDesign primers
836584CTTTGATTTTAGGAGGTGTTATTTTAGGAGGTGTTATTTTAGGAGDesign primers
836731CTTCTTTATTTTTCAGTTCTTTATTCTTTAATTCTTTATTTTTTADesign primers
847169TCTATTGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTT-AATTATGATGATTTGAGGGTTDesign primers
863315GGGTTTCTTTAATCT-CTTTTTCTTTAATCT-CTTTTTCTTTAATCT-CTTTTTCTTTAATCT-CTTTTTCTTTAATCTDesign primers
885541TATTCTTATTATTATTTTTAATCTDesign primers
906894AAAATTCTCAAAAATCTCAAGATTCTCDesign primers
910610GAAAGACTAGGGATA-AAAAAGCTAGGGATA-AAAAAGCTAGGGATA-AAAAAGCTAGGGATA-AAAAAGCTAGGGATADesign primers
914182AACAAAAACAACAAAAAAAACAATDesign primers
936519GCTTTTAATTCTGTGTTTAATTCTGTGTTTAATTCTDesign primers
994424ATTAATCTCATCTTTTTCAATCTCATCTTTTTTAACCTCATTTTTDesign primers
1055664AAAATCATCAAAACCATCAAAATCATCAAAACCATCDesign primers
1142701TTTATTTTTTCTTTTTTATTGTTTAGTTDesign primers
1170802ATCAAAAAGAAAAAGAAGAGGGTAAAGAAGAAGAAAAAGAAGAGGTTAAAGAAGAAGAAAAAGAAGAGGTTADesign primers
1184691CACATCGCCCCCATCGCCCCCATCGCCDesign primers
1212793GATATTTGGGATATTGGGGATATTAGGDesign primers
1366356GAGACTAAAGAGGAAACTAAAGGGGAGCCTAAAGAGDesign primers
1411325AATACGCAAAAAGATTTGGTT-AAAGAACAAAAAGATTTGGTT-AAAGAACAAAAAGATTTGGTT-AAAGAACAAAAAGATTTGGTTDesign primers
1411410AAGAACAGAAAGATTTGGTTA-AAGAACAGAAAGATTTGGTTA-AAGAACAGAAAGATTTGGTTA-AAGAACAGAAAGATTTCATTADesign primers
1412804AAAAGTAGAACAAGAACAACA-AAAGACAGAACAAGAAAAACA-AAAGACAGAACAAGAAAAACA-AAAGACAGAACAAGAAAAACADesign primers
1446433CAAAGAAAGCAGAATCAAAGAGAGCAAAATTAAAGAAAACAAAATDesign primers
1454957CCCCATATCCCCCATGTCTCCCATATCDesign primers
1455155ATCAGTGTTACCGGTATCAGTATTACCGGTGTCCGTGTTGCCGGTDesign primers
1540691TATGGGTGGCATGGGTGGTATGGGAGGDesign primers
1543177ATTTCTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCT-TTCTTTTTTAAAGCCTDesign primers
1567942AAAATGATAAAAAGATAAAACGATDesign primers
1648084TCA-TCT-TCA-TAT-TCT-TCT-TCA-TCTDesign primers

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