Microsatellites /Tandem Repeats database

Genome: Chlamydia pecorum W73

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
26093GAAATAGAAGAAAAAGAAGACATAGAADesign primers
210312TTGCCA-TTTCCA-TTTCCA-TTTCCADesign primers
211918TTGCAG-CTGCAG-CTGCAG-CTGCAGDesign primers
216253AG-AA-AG-GG-AA-AG-AG-AA-AA-AG-AG-AGDesign primers
321564TGCGACTGAGGCTGCGACTGCGACTGCGACTCTGGCDesign primers
381383AAGTTTCTGGGAAAGGACTTTCTGGGAAAGGACTTTCTGGGGAAGDesign primers
381490TTTGAAGGTTCTTTAGGTAAAGGTTCTTTAGGTGAAGATTCTTTADesign primers
381542GCTTTTTAGGTGAGAGTTCTTTAGGTGAAAGTTCTTTAGGTGAGADesign primers
381588TTCTTTAGGTGAAGATTCTTTAGGTGAAAGTTCTTTAGGTGAGAGTTCTTTAGGTGAGAGTTCTTTAGGTGAAAGTTCTTTAGGTGAAGGDesign primers
381681TTTAGGTGAGAGTTCTTTAGGTGAAGATTCTTTAGGTGAGAGTTCTTTAGGTGAAAGTTCTTTAGGTGAAGATTCTTTAGGTGAAAGTTCTTTAGGTGAAGATTCTTTAGGTGAAGATTCTTTAGGTGAAAGTTCTTTAGGTGAGAGTTCTTTAGGTGAAGATTCDesign primers
381847TTAGGTGAAGGCTTTTTAGGTGAAAGTTCTTTAGGTGAAGATTCTTTAGGTGAAAGTTCTTTAGGTGAAGGCTTTTTAGGTGAAAGTTCTTTAGGTGAAGGCTTTDesign primers
381953TAGGTGAGAGTTCTT-TAGGTGAAAGTTCTT-TAGGTGAAGATTCTT-TAGGTGAGAGTTCTT-TAGGTGAGAGTTCTT-TAGGTGAAGATTCTT-TAGGTGAGAGTTCTT-TAGGTGAAGATTCTT-TAGGTGAAAGTTCTT-TAGGTGAGAGTTCTT-TAGGTGAAAGTTCTTDesign primers
382119AGGTGAAGGCTTTTT-AGGTGAAGATTCTTT-AGGTGAAAGTTCTTT-AGGTGAAGATTCTTT-AGGTGAAGATTCTTT-AGGTGAAGATTCTTT-AGGTGAAAGTTCTTT-AGATGAAGGCTCTTT-AGGTAAAGGTTCTTT-AGGTGAAAGTTCTTTDesign primers
561927AA-GA-AA-AA-AA-AT-GA-AA-TA-AA-AA-AA-AT-AA-AADesign primers
582646AAAACAAGAAAAAAAAGAAAAAGAAGADesign primers
588292GATCCTTGC-TATCCTTGC-TATCCTTGC-TATCCTTGCDesign primers
613835ACGATGTCC-ACGATGTCC-ATGATGTCCDesign primers
636362GCAGCGGCT-CCAGCGGCT-CCAGCGGCTDesign primers
654045AAAAAAAATAAAAAAATAAAAAACADesign primers
759927CCAGCAGCAGCACCCGCACCTGCADesign primers
959177TACCTCCA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTA-AAGCACTADesign primers
1030845TTAAAAATAAAATAAAAATTATAADesign primers
1042474AAAACTTAATAACTTAAAAAGTTADesign primers
1097821TTCTTCTGT-ATCTTCTGT-ATCTTCTGTDesign primers

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